Variant report

Variant	rs55783530
Chromosome Location	chr9:116685671-116685672
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12006429	1.00[AMR][1000 genomes]
rs16910655	0.83[AFR][1000 genomes]
rs58180563	1.00[AMR][1000 genomes]
rs58659483	1.00[AMR][1000 genomes]
rs58721687	1.00[AMR][1000 genomes]
rs60909462	1.00[AMR][1000 genomes]
rs73655897	1.00[AMR][1000 genomes]
rs73655900	1.00[AMR][1000 genomes]
rs73658303	1.00[AMR][1000 genomes]
rs73658305	1.00[AMR][1000 genomes]
rs73658307	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:116674600-116690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:116675800-116686000	Weak transcription	Colonic Mucosa	Colon
4	chr9:116675800-116691800	Weak transcription	Lung	lung
5	chr9:116676200-116688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:116679200-116689600	Weak transcription	HSMM	muscle
7	chr9:116679400-116686800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
9	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:116684200-116688000	Weak transcription	HUVEC	blood vessel
11	chr9:116684400-116686200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:116684800-116686000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:116684800-116690800	Weak transcription	Osteobl	bone
15	chr9:116685200-116687000	Weak transcription	Liver	Liver
16	chr9:116685600-116686000	ZNF genes & repeats	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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