Variant report

Variant	rs60909462
Chromosome Location	chr9:116651489-116651490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116622477..116624312-chr9:116649201..116651744,2	MCF-7	breast:
2	chr9:116651215..116653821-chr9:116654616..116657370,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12006429	1.00[AMR][1000 genomes]
rs55783530	1.00[AMR][1000 genomes]
rs58180563	1.00[AMR][1000 genomes]
rs58659483	1.00[AMR][1000 genomes]
rs58721687	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655897	1.00[AMR][1000 genomes]
rs73655900	1.00[AMR][1000 genomes]
rs73658303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73658305	1.00[AMR][1000 genomes]
rs73658307	1.00[AMR][1000 genomes]
rs73658308	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116639200-116663400	Weak transcription	Gastric	stomach
3	chr9:116647000-116651800	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116649000-116651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:116649000-116652000	Weak transcription	Thymus	Thymus
6	chr9:116649000-116652800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:116649000-116653000	Weak transcription	Brain Anterior Caudate	brain
8	chr9:116649200-116651800	Weak transcription	HSMM	muscle
9	chr9:116649200-116652000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:116649200-116652200	Enhancers	Aorta	Aorta
11	chr9:116649200-116652200	Enhancers	Ovary	ovary
12	chr9:116649200-116658000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:116649600-116651600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:116649600-116651800	Weak transcription	NH-A	brain
15	chr9:116649600-116652800	Weak transcription	Fetal Lung	lung
16	chr9:116649600-116660000	Weak transcription	Small Intestine	intestine
17	chr9:116649800-116651800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:116649800-116652000	Weak transcription	Fetal Kidney	kidney
19	chr9:116649800-116652000	Enhancers	Pancreas	Pancrea
20	chr9:116649800-116652800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:116649800-116652800	Weak transcription	K562	blood
22	chr9:116649800-116655000	Weak transcription	Stomach Mucosa	stomach
23	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
24	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:116650000-116651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:116650000-116652000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:116650000-116652800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:116650000-116653800	Weak transcription	Osteobl	bone
29	chr9:116650200-116651800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:116650200-116652800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:116650200-116657600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:116650200-116657800	Weak transcription	HUVEC	blood vessel
33	chr9:116650400-116653200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:116650600-116651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:116650600-116651800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr9:116650600-116652600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:116650600-116652800	Strong transcription	A549	lung
38	chr9:116650600-116652800	Weak transcription	NHDF-Ad	bronchial
39	chr9:116650600-116662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:116650800-116651600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:116650800-116651600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:116650800-116652400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:116650800-116652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:116651000-116652600	Weak transcription	Fetal Brain Female	brain
45	chr9:116651000-116652800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr9:116651000-116652800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:116651000-116654200	Weak transcription	Liver	Liver
48	chr9:116651000-116654800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:116651000-116662600	Weak transcription	Fetal Intestine Small	intestine
50	chr9:116651000-116662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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