Variant report

Variant	rs73658305
Chromosome Location	chr9:116690169-116690170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12006429	1.00[AMR][1000 genomes]
rs55783530	1.00[AMR][1000 genomes]
rs58180563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58659483	1.00[AMR][1000 genomes]
rs58721687	1.00[AMR][1000 genomes]
rs60909462	1.00[AMR][1000 genomes]
rs73655897	1.00[AMR][1000 genomes]
rs73655900	1.00[AMR][1000 genomes]
rs73658303	1.00[AMR][1000 genomes]
rs73658307	1.00[AMR][1000 genomes]
rs73658308	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116669600-116690400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:116675800-116691800	Weak transcription	Lung	lung
3	chr9:116679400-116691600	Weak transcription	Pancreas	Pancrea
4	chr9:116682400-116692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:116684800-116690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:116684800-116690800	Weak transcription	Osteobl	bone
7	chr9:116686000-116691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:116686000-116692000	Weak transcription	Fetal Heart	heart
9	chr9:116689400-116690200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr9:116689400-116690800	ZNF genes & repeats	Fetal Lung	lung
11	chr9:116689600-116691400	ZNF genes & repeats	HSMM	muscle
12	chr9:116689600-116693400	Weak transcription	Fetal Kidney	kidney
13	chr9:116689800-116690200	Weak transcription	HUVEC	blood vessel
14	chr9:116689800-116691800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:116689800-116692000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:116690000-116692400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:116690000-116692400	ZNF genes & repeats	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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