Variant report
| Variant | rs12006429 |
|---|---|
| Chromosome Location | chr9:116625142-116625143 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157657 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs55783530 | 1.00[AMR][1000 genomes] |
| rs58180563 | 1.00[AMR][1000 genomes] |
| rs58659483 | 1.00[AMR][1000 genomes] |
| rs58721687 | 1.00[AMR][1000 genomes] |
| rs60909462 | 1.00[AMR][1000 genomes] |
| rs73655897 | 1.00[AMR][1000 genomes] |
| rs73655899 | 0.95[AFR][1000 genomes] |
| rs73655900 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73658303 | 1.00[AMR][1000 genomes] |
| rs73658305 | 1.00[AMR][1000 genomes] |
| rs73658307 | 1.00[AMR][1000 genomes] |
| rs73658308 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430093 | chr9:116330446-117325446 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
