Variant report

Variant	rs5013525
Chromosome Location	chr3:133700071-133700072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133696142..133700134-chr3:133702355..133707029,6	MCF-7	breast:
2	chr3:133696346..133698164-chr3:133698551..133700077,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10049358	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10049385	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4327389	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367057	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4549269	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4552342	0.94[ASN][1000 genomes]
rs62272000	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795110	0.94[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71639008	0.93[ASN][1000 genomes]
rs7646298	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7646392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7646473	0.96[CEU][hapmap];0.88[AFR][1000 genomes]
rs9809190	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870647	0.93[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133664800-133713000	Weak transcription	Gastric	stomach
3	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
4	chr3:133694600-133703800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:133695800-133705400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
7	chr3:133696600-133700200	Enhancers	Left Ventricle	heart
8	chr3:133697200-133700200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:133698200-133700200	Enhancers	Right Atrium	heart
10	chr3:133698200-133704600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:133698200-133705400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:133698400-133704200	Weak transcription	Fetal Stomach	stomach
13	chr3:133698600-133701600	Weak transcription	Pancreas	Pancrea
14	chr3:133699000-133703400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:133699200-133701600	Weak transcription	Fetal Thymus	thymus
16	chr3:133699400-133705200	Weak transcription	Stomach Mucosa	stomach
17	chr3:133699600-133705200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:133699800-133701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:133699800-133701800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:133699800-133705200	Weak transcription	HUVEC	blood vessel
21	chr3:133699800-133707400	Weak transcription	Spleen	Spleen
22	chr3:133699800-133708200	Weak transcription	Lung	lung
23	chr3:133699800-133709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:133699800-133709400	Weak transcription	Right Ventricle	heart
25	chr3:133700000-133702400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:133700000-133705200	Weak transcription	Fetal Muscle Trunk	muscle

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