Variant report

Variant	rs6795110
Chromosome Location	chr3:133707480-133707481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133705022..133707206-chr3:133707318..133709896,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10049358	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10049385	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4327389	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4367057	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4549269	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4552342	0.89[ASN][1000 genomes]
rs5013525	0.94[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62272000	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71639008	0.90[ASN][1000 genomes]
rs7646392	0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9809190	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9870647	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664800-133713000	Weak transcription	Gastric	stomach
2	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
3	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
4	chr3:133699800-133708200	Weak transcription	Lung	lung
5	chr3:133699800-133709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:133699800-133709400	Weak transcription	Right Ventricle	heart
7	chr3:133703400-133708400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:133704600-133708800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:133705200-133708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:133705200-133708200	Enhancers	Fetal Thymus	thymus
11	chr3:133705400-133708400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:133705400-133712200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:133705600-133707800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:133705800-133707600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:133705800-133707800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:133705800-133710000	Weak transcription	Adipose Nuclei	Adipose
17	chr3:133705800-133710400	Weak transcription	Right Atrium	heart
18	chr3:133706000-133708400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:133706000-133708400	Enhancers	Fetal Intestine Small	intestine
20	chr3:133706000-133708400	Enhancers	Small Intestine	intestine
21	chr3:133706200-133708800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr3:133706200-133710000	Weak transcription	HSMM	muscle
23	chr3:133706400-133707800	Enhancers	Fetal Kidney	kidney
24	chr3:133706400-133708400	Enhancers	Fetal Intestine Large	intestine
25	chr3:133706400-133708800	Enhancers	Duodenum Mucosa	Duodenum
26	chr3:133706600-133708200	Enhancers	Stomach Mucosa	stomach
27	chr3:133706600-133708400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:133706600-133708400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:133706800-133707800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr3:133706800-133708400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
31	chr3:133706800-133708400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:133706800-133709400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr3:133706800-133709400	Weak transcription	HUVEC	blood vessel
34	chr3:133707000-133707600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:133707000-133707600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr3:133707000-133709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:133707000-133715800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr3:133707200-133707600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr3:133707200-133707600	Enhancers	Colonic Mucosa	Colon
40	chr3:133707200-133707800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:133707200-133707800	Enhancers	Left Ventricle	heart
42	chr3:133707200-133708600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:133707400-133707800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
44	chr3:133707400-133707800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr3:133707400-133707800	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr3:133707400-133708000	Enhancers	Placenta	Placenta
47	chr3:133707400-133708000	Enhancers	Spleen	Spleen
48	chr3:133707400-133708200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:133707400-133708200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:133707400-133708400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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