Variant report

Variant	rs62272000
Chromosome Location	chr3:133701141-133701142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133700315..133702801-chr3:133704322..133706297,2	K562	blood:
2	chr3:133695144..133697302-chr3:133700435..133702918,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10049358	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10049385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4327389	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4367057	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4549269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4552342	0.95[ASN][1000 genomes]
rs5013525	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795110	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71639008	0.96[ASN][1000 genomes]
rs7646298	0.85[AFR][1000 genomes]
rs7646392	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7646473	0.93[AFR][1000 genomes]
rs9809190	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9870647	0.96[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:133664800-133713000	Weak transcription	Gastric	stomach
3	chr3:133688000-133710800	Weak transcription	Fetal Lung	lung
4	chr3:133694600-133703800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:133695800-133705400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:133696000-133709400	Weak transcription	Esophagus	oesophagus
7	chr3:133698200-133704600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:133698200-133705400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:133698400-133704200	Weak transcription	Fetal Stomach	stomach
10	chr3:133698600-133701600	Weak transcription	Pancreas	Pancrea
11	chr3:133699000-133703400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:133699200-133701600	Weak transcription	Fetal Thymus	thymus
13	chr3:133699400-133705200	Weak transcription	Stomach Mucosa	stomach
14	chr3:133699600-133705200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:133699800-133701800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:133699800-133701800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:133699800-133705200	Weak transcription	HUVEC	blood vessel
18	chr3:133699800-133707400	Weak transcription	Spleen	Spleen
19	chr3:133699800-133708200	Weak transcription	Lung	lung
20	chr3:133699800-133709400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:133699800-133709400	Weak transcription	Right Ventricle	heart
22	chr3:133700000-133702400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:133700000-133705200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:133700200-133705200	Weak transcription	Left Ventricle	heart

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