Variant report

Variant	rs501785
Chromosome Location	chr11:94399572-94399573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94390356..94393073-chr11:94395941..94399822,3	K562	blood:
2	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
3	chr11:94368321..94373611-chr11:94398566..94402390,4	K562	blood:

Variant related genes	Relation type
ENSG00000233536	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16920846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2509337	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2509341	0.93[CHB][hapmap];0.95[YRI][hapmap]
rs4127397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs487078	0.87[CHB][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs564414	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs568260	0.83[AMR][1000 genomes]
rs58248484	1.00[ASN][1000 genomes]
rs58252773	1.00[ASN][1000 genomes]
rs584225	0.88[CHB][hapmap]
rs615461	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs677244	0.81[CHB][hapmap]
rs677331	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs73522209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3356576	chr11:94396904-94400502	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:94396000-94404600	Weak transcription	Gastric	stomach
5	chr11:94396400-94404600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:94396800-94400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:94397000-94400000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:94397000-94400400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:94397800-94403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:94398000-94401000	Weak transcription	Esophagus	oesophagus
11	chr11:94398000-94404200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:94398000-94404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:94398200-94402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:94398600-94403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:94398600-94404800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:94398800-94400000	Weak transcription	Pancreas	Pancrea
17	chr11:94398800-94401800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:94399000-94402000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:94399000-94402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:94399000-94404400	Weak transcription	HMEC	breast
21	chr11:94399200-94400600	Weak transcription	Placenta	Placenta
22	chr11:94399400-94399600	Enhancers	K562	blood
23	chr11:94399400-94401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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