Variant report

Variant	rs564414
Chromosome Location	chr11:94394536-94394537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16920846	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2509337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509341	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs4127397	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs487078	0.94[CHB][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs501785	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs568260	1.00[AMR][1000 genomes]
rs58248484	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58252773	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs584225	0.94[CHB][hapmap]
rs615461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677244	0.93[CHB][hapmap]
rs677331	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs73522209	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94389000-94394800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:94390800-94396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:94391200-94396400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:94391800-94394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:94391800-94394800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:94391800-94395600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:94392000-94394600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:94392000-94395600	Weak transcription	NHEK	skin
12	chr11:94392200-94395000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:94392400-94395800	Weak transcription	Placenta	Placenta
15	chr11:94392600-94394600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:94393800-94394600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:94393800-94394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:94393800-94395600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:94394200-94395400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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