Variant report

Variant	rs2509341
Chromosome Location	chr11:94400922-94400923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
2	chr11:94368321..94373611-chr11:94398566..94402390,4	K562	blood:
3	chr11:94400559..94402615-chr11:94409133..94411401,2	K562	blood:
4	chr11:94396012..94398288-chr11:94399899..94402115,2	K562	blood:

Variant related genes	Relation type
ENSG00000233536	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10765692	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10831261	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10831264	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020892	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12285867	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12362413	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12362437	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12364020	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12365249	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12365323	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16920846	0.93[CHB][hapmap]
rs17607689	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1790233	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4127395	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4127396	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4127397	0.92[CHB][hapmap]
rs487078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492621	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs501785	0.93[CHB][hapmap];0.95[YRI][hapmap]
rs506926	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536189	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs561886	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56412399	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567300	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs584225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60917421	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs674106	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677331	0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679928	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7104326	0.81[EUR][1000 genomes]
rs7110345	0.87[AMR][1000 genomes]
rs7115112	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7115977	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7119223	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7130432	0.83[AMR][1000 genomes]
rs7131489	0.80[EUR][1000 genomes]
rs73522217	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927928	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7931634	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:94396000-94404600	Weak transcription	Gastric	stomach
5	chr11:94396400-94404600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:94397800-94403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:94398000-94401000	Weak transcription	Esophagus	oesophagus
8	chr11:94398000-94404200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:94398000-94404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:94398200-94402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:94398600-94403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:94398600-94404800	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:94398800-94401800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:94399000-94402000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:94399000-94402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:94399000-94404400	Weak transcription	HMEC	breast
17	chr11:94399400-94401800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:94400000-94402000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:94400400-94409600	Weak transcription	K562	blood
20	chr11:94400600-94401000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:94400600-94401200	Enhancers	Adipose Nuclei	Adipose
22	chr11:94400800-94401000	Enhancers	Placenta	Placenta
23	chr11:94400800-94401000	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links