Variant report

Variant	rs679928
Chromosome Location	chr11:94393289-94393290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10765692	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10831261	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10831264	0.97[ASN][1000 genomes]
rs12285867	0.85[AMR][1000 genomes]
rs12362413	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12362437	0.80[AMR][1000 genomes]
rs12364020	0.80[AMR][1000 genomes]
rs12365249	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12365323	0.80[AMR][1000 genomes]
rs2509341	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4127395	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4127396	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs487078	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs506926	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs536189	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561886	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56412399	0.96[ASN][1000 genomes]
rs567300	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs584225	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs586026	0.94[AFR][1000 genomes]
rs60917421	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs674106	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs677244	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs677331	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7104326	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7110345	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115977	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7119223	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7130432	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7131489	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73522217	0.97[ASN][1000 genomes]
rs7927928	0.80[AMR][1000 genomes]
rs7931634	0.80[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94389000-94394800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:94390800-94396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:94391000-94393600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:94391200-94396400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:94391800-94394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:94391800-94394800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:94391800-94395600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:94392000-94393600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:94392000-94393800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:94392000-94394600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:94392000-94395600	Weak transcription	NHEK	skin
15	chr11:94392200-94393800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:94392200-94395000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:94392400-94395800	Weak transcription	Placenta	Placenta
19	chr11:94392600-94394600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:94392800-94394200	Weak transcription	Fetal Thymus	thymus

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