Variant report

Variant	rs7119223
Chromosome Location	chr11:94396565-94396566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
2	chr11:94396012..94398288-chr11:94399899..94402115,2	K562	blood:
3	chr11:94390356..94393073-chr11:94395941..94399822,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10765692	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831264	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11020884	0.94[YRI][hapmap]
rs11020885	0.91[YRI][hapmap]
rs11020892	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285867	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362437	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364020	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365323	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607689	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2509341	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4127395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4127396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487078	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs492621	0.82[ASN][1000 genomes]
rs506926	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs536189	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs561886	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56412399	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs567300	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs584225	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60917421	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs674106	0.82[AMR][1000 genomes]
rs677244	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs677331	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs679928	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7103955	1.00[ASN][1000 genomes]
rs7104326	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110345	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7115112	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7115977	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127260	0.93[ASN][1000 genomes]
rs7130432	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7131489	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73522217	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7927928	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931634	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7119223	SNORA1	cis	parietal	SCAN
rs7119223	CRYL1	trans	lymphoblastoid	seeQTL
rs7119223	SESN3	cis	parietal	SCAN
rs7119223	SESN3	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:94395400-94396600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:94395400-94396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:94395600-94397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:94395800-94399200	Enhancers	Placenta	Placenta
10	chr11:94396000-94397400	Weak transcription	NHEK	skin
11	chr11:94396000-94397600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:94396000-94397600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:94396000-94404600	Weak transcription	Gastric	stomach
14	chr11:94396200-94397000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:94396400-94396800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr11:94396400-94396800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chr11:94396400-94397000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr11:94396400-94397000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr11:94396400-94397000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:94396400-94397200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr11:94396400-94397800	Genic enhancers	H9 Cell Line	embryonic stem cell
22	chr11:94396400-94397800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:94396400-94398800	Enhancers	Hela-S3	cervix
24	chr11:94396400-94404600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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