Variant report

Variant	rs7103955
Chromosome Location	chr11:94396071-94396072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
2	chr11:94396012..94398288-chr11:94399899..94402115,2	K562	blood:
3	chr11:94390356..94393073-chr11:94395941..94399822,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10765692	1.00[ASN][1000 genomes]
rs10831261	1.00[ASN][1000 genomes]
rs11020892	1.00[ASN][1000 genomes]
rs12285867	1.00[ASN][1000 genomes]
rs12362413	1.00[ASN][1000 genomes]
rs12362437	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12364020	1.00[ASN][1000 genomes]
rs12365249	1.00[ASN][1000 genomes]
rs12365323	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17607689	0.98[ASN][1000 genomes]
rs4127395	1.00[ASN][1000 genomes]
rs4127396	1.00[ASN][1000 genomes]
rs492621	0.82[ASN][1000 genomes]
rs60917421	0.93[ASN][1000 genomes]
rs7104326	1.00[ASN][1000 genomes]
rs7110345	0.93[ASN][1000 genomes]
rs7115977	1.00[ASN][1000 genomes]
rs7119223	1.00[ASN][1000 genomes]
rs7127260	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130432	0.93[ASN][1000 genomes]
rs7131489	1.00[ASN][1000 genomes]
rs7927928	1.00[ASN][1000 genomes]
rs7931634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7103955	SNORA1	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94390800-94396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:94391200-94396400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:94394800-94396200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:94395000-94396200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:94395400-94396600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:94395400-94396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:94395600-94396400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:94395600-94396400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:94395600-94397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:94395800-94396400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:94395800-94399200	Enhancers	Placenta	Placenta
17	chr11:94396000-94396400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:94396000-94396400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:94396000-94396400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:94396000-94397400	Weak transcription	NHEK	skin
21	chr11:94396000-94397600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:94396000-94397600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:94396000-94404600	Weak transcription	Gastric	stomach

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