Variant report

Variant	rs492621
Chromosome Location	chr11:94411152-94411153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94400559..94402615-chr11:94409133..94411401,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10765692	0.82[ASN][1000 genomes]
rs10831261	0.82[ASN][1000 genomes]
rs10831264	0.85[EUR][1000 genomes]
rs11020892	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12285867	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12362413	0.82[ASN][1000 genomes]
rs12362437	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12364020	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12365249	0.82[ASN][1000 genomes]
rs12365323	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17607689	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2509341	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4127395	0.82[ASN][1000 genomes]
rs4127396	0.82[ASN][1000 genomes]
rs487078	0.86[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56412399	0.85[EUR][1000 genomes]
rs584225	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs674106	0.82[EUR][1000 genomes]
rs677244	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs677331	0.83[EUR][1000 genomes]
rs7103955	0.82[ASN][1000 genomes]
rs7104326	0.82[ASN][1000 genomes]
rs7115112	0.84[EUR][1000 genomes]
rs7115977	0.82[ASN][1000 genomes]
rs7119223	0.82[ASN][1000 genomes]
rs7131489	0.82[ASN][1000 genomes]
rs72965891	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73522217	0.84[EUR][1000 genomes]
rs7927928	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7931634	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs492621	SESN3	cis	cerebellum	SCAN
rs492621	C11orf75	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94404400-94413000	Enhancers	HMEC	breast
2	chr11:94405400-94415600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94406200-94411600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr11:94406400-94411200	Weak transcription	Aorta	Aorta
5	chr11:94406400-94411200	Enhancers	NHEK	skin
6	chr11:94406600-94411200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:94406600-94411600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:94406600-94412400	Enhancers	Psoas Muscle	Psoas
9	chr11:94406800-94413000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:94407200-94412800	Enhancers	Fetal Intestine Large	intestine
11	chr11:94407400-94412600	Enhancers	Fetal Intestine Small	intestine
12	chr11:94408200-94412400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:94408800-94413000	Enhancers	Esophagus	oesophagus
14	chr11:94409600-94413600	Enhancers	K562	blood
15	chr11:94410400-94412600	Enhancers	Placenta	Placenta
16	chr11:94410400-94414000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:94410800-94411200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:94410800-94412600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:94411000-94415400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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