Variant report

Variant	rs674106
Chromosome Location	chr11:94398609-94398610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94390356..94393073-chr11:94395941..94399822,3	K562	blood:
2	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:
3	chr11:94368321..94373611-chr11:94398566..94402390,4	K562	blood:
4	chr11:94389844..94391856-chr11:94396881..94399230,2	K562	blood:

Variant related genes	Relation type
ENSG00000233536	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10765692	0.82[AMR][1000 genomes]
rs10831261	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10831264	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020892	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12285867	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12362413	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12362437	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12364020	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12365249	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12365323	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17607689	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1790233	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2509341	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4127395	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4127396	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs487078	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492621	0.82[EUR][1000 genomes]
rs506926	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs536189	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs561886	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56412399	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567300	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs584225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586026	0.95[AFR][1000 genomes]
rs677244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679928	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7104326	0.81[AMR][1000 genomes]
rs7115112	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7115977	0.82[AMR][1000 genomes]
rs7119223	0.82[AMR][1000 genomes]
rs7131489	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73522217	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927928	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7931634	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3356576	chr11:94396904-94400502	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:94395800-94399200	Enhancers	Placenta	Placenta
5	chr11:94396000-94404600	Weak transcription	Gastric	stomach
6	chr11:94396400-94398800	Enhancers	Hela-S3	cervix
7	chr11:94396400-94404600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:94396800-94400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:94397000-94400000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:94397000-94400400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:94397600-94398800	Enhancers	Fetal Intestine Large	intestine
12	chr11:94397600-94398800	Enhancers	Pancreas	Pancrea
13	chr11:94397600-94399200	Enhancers	Fetal Intestine Small	intestine
14	chr11:94397800-94403600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:94398000-94398800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:94398000-94398800	Weak transcription	HMEC	breast
17	chr11:94398000-94401000	Weak transcription	Esophagus	oesophagus
18	chr11:94398000-94404200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:94398000-94404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:94398200-94398800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:94398200-94402000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:94398600-94398800	Genic enhancers	H9 Cell Line	embryonic stem cell
23	chr11:94398600-94399000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:94398600-94403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:94398600-94404800	Weak transcription	Fetal Muscle Leg	muscle

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