Variant report

Variant	rs56412399
Chromosome Location	chr11:94406632-94406633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10765692	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10831261	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10831264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020892	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12285867	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12362413	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12362437	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12364020	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12365249	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12365323	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17607689	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1790233	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2509341	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4127395	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4127396	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs487078	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs492621	0.85[EUR][1000 genomes]
rs506926	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536189	0.97[ASN][1000 genomes]
rs561886	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567300	0.97[ASN][1000 genomes]
rs584225	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60917421	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs674106	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677244	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs677331	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs679928	0.96[ASN][1000 genomes]
rs7104326	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7110345	0.90[AMR][1000 genomes]
rs7115112	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7115977	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7119223	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7130432	0.87[AMR][1000 genomes]
rs73522217	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927928	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7931634	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94400400-94409600	Weak transcription	K562	blood
3	chr11:94403000-94406800	Weak transcription	Fetal Brain Male	brain
4	chr11:94403800-94407200	Weak transcription	Right Atrium	heart
5	chr11:94404400-94413000	Enhancers	HMEC	breast
6	chr11:94405000-94407600	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:94405000-94410400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:94405200-94407000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:94405200-94410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:94405400-94415600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:94405600-94407200	Weak transcription	HSMMtube	muscle
12	chr11:94405800-94407000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:94405800-94408800	Enhancers	Fetal Muscle Leg	muscle
14	chr11:94406200-94407000	Weak transcription	Esophagus	oesophagus
15	chr11:94406200-94407200	Weak transcription	Pancreas	Pancrea
16	chr11:94406200-94411600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:94406400-94411200	Weak transcription	Aorta	Aorta
18	chr11:94406400-94411200	Enhancers	NHEK	skin
19	chr11:94406600-94407000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr11:94406600-94407200	Enhancers	Adipose Nuclei	Adipose
21	chr11:94406600-94407800	Enhancers	Rectal Smooth Muscle	rectum
22	chr11:94406600-94409000	Enhancers	Colon Smooth Muscle	Colon
23	chr11:94406600-94411200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:94406600-94411600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:94406600-94412400	Enhancers	Psoas Muscle	Psoas

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