Variant report

Variant	rs7130432
Chromosome Location	chr11:94395496-94395497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94393858..94398288-chr11:94398504..94402115,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10765692	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831261	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831264	0.87[AMR][1000 genomes]
rs11020892	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12285867	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12362413	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12362437	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12364020	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12365249	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12365323	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17607689	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2509341	0.83[AMR][1000 genomes]
rs4127395	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4127396	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs487078	0.83[AMR][1000 genomes]
rs506926	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs536189	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs561886	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56412399	0.87[AMR][1000 genomes]
rs567300	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60917421	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679928	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7103955	0.93[ASN][1000 genomes]
rs7104326	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110345	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115112	0.87[AMR][1000 genomes]
rs7115977	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119223	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7127260	1.00[ASN][1000 genomes]
rs7131489	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73522217	0.87[AMR][1000 genomes]
rs7927928	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931634	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7130432	SESN3	cis	cerebellum	SCAN
rs7130432	SESN3	cis	parietal	SCAN
rs7130432	SNORA1	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94384600-94404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94390800-94396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:94391000-94404600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:94391200-94396400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:94391800-94395600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:94391800-94396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:94392000-94395600	Weak transcription	NHEK	skin
8	chr11:94392200-94398000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:94392400-94395800	Weak transcription	Placenta	Placenta
10	chr11:94393800-94395600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:94394600-94395800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:94394600-94396000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:94394600-94396000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:94394600-94396000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:94394800-94396000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:94394800-94396200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:94395000-94396200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:94395400-94396600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:94395400-94396600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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