Variant report
| Variant | rs502016 |
|---|---|
| Chromosome Location | chr6:145561500-145561501 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs2064875 | 0.90[ASN][1000 genomes] |
| rs2743955 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2753088 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2753090 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs471039 | 0.91[EUR][1000 genomes] |
| rs474562 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs488055 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs503180 | 0.92[EUR][1000 genomes] |
| rs509673 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs509810 | 0.91[EUR][1000 genomes] |
| rs511519 | 0.91[EUR][1000 genomes] |
| rs512301 | 0.91[EUR][1000 genomes] |
| rs512376 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs518402 | 0.91[EUR][1000 genomes] |
| rs522080 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs523704 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs523820 | 0.91[EUR][1000 genomes] |
| rs524460 | 0.91[EUR][1000 genomes] |
| rs534621 | 0.91[EUR][1000 genomes] |
| rs535580 | 0.91[EUR][1000 genomes] |
| rs552434 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs563352 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs577443 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6939914 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022965 | chr6:145374851-145635385 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145560400-145565800 | Weak transcription | Fetal Brain Male | brain |
