Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2064875	0.81[ASN][1000 genomes]
rs2753088	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2753090	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs471039	0.88[EUR][1000 genomes]
rs474562	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs488055	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs502016	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs503180	0.89[EUR][1000 genomes]
rs509673	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs509810	0.88[EUR][1000 genomes]
rs511519	0.88[EUR][1000 genomes]
rs512301	0.88[EUR][1000 genomes]
rs512376	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs518402	0.88[EUR][1000 genomes]
rs522080	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs523704	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs523820	0.88[EUR][1000 genomes]
rs524460	0.88[EUR][1000 genomes]
rs534621	0.88[EUR][1000 genomes]
rs535580	0.88[EUR][1000 genomes]
rs552434	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs563352	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs577443	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6939914	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886745	chr6:145494486-145554124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145522800-145528400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:145526600-145528400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:145526800-145528400	Enhancers	Adipose Nuclei	Adipose
4	chr6:145526800-145528600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:145527200-145528400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:145527200-145528600	Enhancers	Osteobl	bone
7	chr6:145527400-145528200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:145527400-145528200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:145527400-145528200	Enhancers	HSMMtube	muscle
10	chr6:145527400-145528200	Enhancers	NHLF	lung
11	chr6:145527400-145528400	Enhancers	NH-A	brain
12	chr6:145527800-145528400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:145527800-145528800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:145527800-145529000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:145528000-145528200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:145528000-145528200	Flanking Active TSS	NHDF-Ad	bronchial

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