Variant report

Variant	rs5027895
Chromosome Location	chr15:87578440-87578441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11073689	0.82[ASN][1000 genomes]
rs1897661	0.81[ASN][1000 genomes]
rs2570123	0.80[ASN][1000 genomes]
rs2701397	0.81[ASN][1000 genomes]
rs7177132	0.81[ASN][1000 genomes]
rs7182264	0.81[ASN][1000 genomes]
rs9921009	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv533986	chr15:87100872-87633926	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1048366	chr15:87557904-87586707	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3327719	chr15:87577123-87579596	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv827426	chr15:87577468-87578633	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3377979	chr15:87578327-87578445	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3364727	chr15:87578337-87578443	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87575800-87579000	Weak transcription	Brain Substantia Nigra	brain
2	chr15:87576000-87579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:87576000-87581200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:87576400-87579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:87577000-87579200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:87577200-87578800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:87577400-87579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:87577800-87581400	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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