Variant report

Variant	rs5030196
Chromosome Location	chr11:32439298-32439299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs5030190	1.00[AFR][1000 genomes]
rs5030216	1.00[AFR][1000 genomes]
rs5030220	1.00[AFR][1000 genomes]
rs5030222	1.00[AFR][1000 genomes]
rs5030229	1.00[AFR][1000 genomes]
rs5030235	1.00[AFR][1000 genomes]
rs7105624	0.84[AFR][1000 genomes]
rs7112566	0.94[AFR][1000 genomes]
rs7120241	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32434000-32442400	Weak transcription	Right Ventricle	heart
2	chr11:32436400-32441800	Enhancers	Dnd41	blood
3	chr11:32436600-32442200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:32436600-32442200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:32437800-32440200	Strong transcription	K562	blood
6	chr11:32437800-32440800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:32438400-32442200	Weak transcription	Left Ventricle	heart
8	chr11:32438800-32439600	Genic enhancers	Fetal Kidney	kidney
9	chr11:32438800-32442200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:32438800-32447800	Weak transcription	Ovary	ovary
11	chr11:32439200-32440200	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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