Variant report

Variant	rs5030235
Chromosome Location	chr11:32432393-32432394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs5030190	1.00[AFR][1000 genomes]
rs5030196	1.00[AFR][1000 genomes]
rs5030216	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs5030220	1.00[AFR][1000 genomes]
rs5030222	1.00[AFR][1000 genomes]
rs5030229	1.00[AFR][1000 genomes]
rs7105624	0.84[AFR][1000 genomes]
rs7112566	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7120241	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32422200-32433400	Weak transcription	Ovary	ovary
2	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
4	chr11:32427800-32435000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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