Variant report

Variant	rs503105
Chromosome Location	chr2:21315664-21315665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21294169..21296510-chr2:21313708..21315944,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs12618518	0.90[ASN][1000 genomes]
rs13411597	0.87[EUR][1000 genomes]
rs1367119	0.86[EUR][1000 genomes]
rs1367120	0.86[EUR][1000 genomes]
rs1652416	0.87[EUR][1000 genomes]
rs1652417	0.87[EUR][1000 genomes]
rs1652419	0.88[EUR][1000 genomes]
rs1652420	0.88[EUR][1000 genomes]
rs1652421	0.88[EUR][1000 genomes]
rs1652422	0.88[EUR][1000 genomes]
rs1652423	0.85[EUR][1000 genomes]
rs1712246	0.82[EUR][1000 genomes]
rs1712247	0.88[EUR][1000 genomes]
rs1712248	0.86[EUR][1000 genomes]
rs1712250	0.88[EUR][1000 genomes]
rs1712251	0.87[EUR][1000 genomes]
rs312936	0.86[EUR][1000 genomes]
rs312944	0.92[EUR][1000 genomes]
rs312979	0.88[EUR][1000 genomes]
rs312981	0.88[EUR][1000 genomes]
rs312982	0.88[EUR][1000 genomes]
rs312983	0.87[EUR][1000 genomes]
rs312984	0.88[EUR][1000 genomes]
rs312985	0.88[EUR][1000 genomes]
rs4560142	0.88[EUR][1000 genomes]
rs4591370	0.88[EUR][1000 genomes]
rs473269	0.87[EUR][1000 genomes]
rs477146	0.87[EUR][1000 genomes]
rs478442	0.87[EUR][1000 genomes]
rs478588	0.94[EUR][1000 genomes]
rs483621	0.87[EUR][1000 genomes]
rs486246	0.86[EUR][1000 genomes]
rs487858	0.86[EUR][1000 genomes]
rs490757	0.86[EUR][1000 genomes]
rs492255	0.88[EUR][1000 genomes]
rs494315	0.86[EUR][1000 genomes]
rs494465	0.86[EUR][1000 genomes]
rs502323	0.86[EUR][1000 genomes]
rs504091	0.85[EUR][1000 genomes]
rs504616	0.82[EUR][1000 genomes]
rs506585	0.87[EUR][1000 genomes]
rs507616	0.87[EUR][1000 genomes]
rs515135	0.82[EUR][1000 genomes]
rs522250	0.88[EUR][1000 genomes]
rs522822	0.86[EUR][1000 genomes]
rs522963	0.87[EUR][1000 genomes]
rs525172	0.88[EUR][1000 genomes]
rs527034	0.88[EUR][1000 genomes]
rs527259	0.82[EUR][1000 genomes]
rs529396	0.88[EUR][1000 genomes]
rs529697	0.88[EUR][1000 genomes]
rs530474	0.88[EUR][1000 genomes]
rs531380	0.87[EUR][1000 genomes]
rs532225	0.87[EUR][1000 genomes]
rs532300	0.88[EUR][1000 genomes]
rs533211	0.88[EUR][1000 genomes]
rs533772	0.83[EUR][1000 genomes]
rs539845	0.81[EUR][1000 genomes]
rs540897	0.87[EUR][1000 genomes]
rs541041	0.81[EUR][1000 genomes]
rs541569	0.87[EUR][1000 genomes]
rs544450	0.88[EUR][1000 genomes]
rs547179	0.87[EUR][1000 genomes]
rs547235	0.88[EUR][1000 genomes]
rs548145	0.81[EUR][1000 genomes]
rs548506	0.88[EUR][1000 genomes]
rs557197	0.88[EUR][1000 genomes]
rs558130	0.88[EUR][1000 genomes]
rs558342	0.87[EUR][1000 genomes]
rs559318	0.88[EUR][1000 genomes]
rs559967	0.86[EUR][1000 genomes]
rs560408	0.87[EUR][1000 genomes]
rs560522	0.88[EUR][1000 genomes]
rs561850	0.87[EUR][1000 genomes]
rs562338	0.81[EUR][1000 genomes]
rs563290	0.81[EUR][1000 genomes]
rs563719	0.87[EUR][1000 genomes]
rs563752	0.87[EUR][1000 genomes]
rs569014	0.81[EUR][1000 genomes]
rs570033	0.87[EUR][1000 genomes]
rs572246	0.85[EUR][1000 genomes]
rs573314	0.88[EUR][1000 genomes]
rs574461	0.86[EUR][1000 genomes]
rs581411	0.81[EUR][1000 genomes]
rs614303	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs668948	0.81[EUR][1000 genomes]
rs9798358	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21313800-21316400	Enhancers	Liver	Liver
3	chr2:21313800-21316800	Enhancers	Fetal Intestine Small	intestine
4	chr2:21315200-21315800	Flanking Active TSS	HepG2	liver
5	chr2:21315200-21316000	Enhancers	Duodenum Mucosa	Duodenum
6	chr2:21315400-21315800	Enhancers	Fetal Intestine Large	intestine
7	chr2:21315400-21316000	Enhancers	Adipose Nuclei	Adipose
8	chr2:21315400-21316200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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