Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12714264	0.83[CEU][hapmap]
rs312944	1.00[ASN][1000 genomes]
rs34872576	1.00[ASN][1000 genomes]
rs34916112	1.00[ASN][1000 genomes]
rs478442	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs478588	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503105	0.81[EUR][1000 genomes]
rs515135	0.97[EUR][1000 genomes]
rs541041	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541569	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs544039	0.84[CEU][hapmap]
rs548145	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560408	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs563290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580889	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581411	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614303	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668948	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672889	1.00[ASN][1000 genomes]
rs67332771	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

Variant related diseases (count:2)

Disease	PMID	Source
LDL cholesterol	18193043	GWAS catalog
LDL cholesterol	18262040	GWAS catalog

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21284800-21288400	Weak transcription	HepG2	liver

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