Variant report

Variant	rs672889
Chromosome Location	chr2:21319016-21319017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC010872.2.1-1	chr2:21318785-21319683	NONHSAT069479

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10221768	0.86[EUR][1000 genomes]
rs13011615	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13423380	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1652419	0.83[AFR][1000 genomes]
rs1652420	0.83[AFR][1000 genomes]
rs1652421	0.83[AFR][1000 genomes]
rs1652422	0.83[AFR][1000 genomes]
rs1652423	0.82[AFR][1000 genomes]
rs1712247	0.83[AFR][1000 genomes]
rs1713222	0.80[AMR][1000 genomes]
rs312944	1.00[ASN][1000 genomes]
rs312981	0.83[AFR][1000 genomes]
rs312982	0.83[AFR][1000 genomes]
rs312983	0.83[AFR][1000 genomes]
rs312984	0.83[AFR][1000 genomes]
rs312985	0.83[AFR][1000 genomes]
rs34872576	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34882389	0.91[EUR][1000 genomes]
rs34916112	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35913552	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36018965	0.92[EUR][1000 genomes]
rs4560142	0.82[AFR][1000 genomes]
rs4591370	0.82[AFR][1000 genomes]
rs478588	1.00[ASN][1000 genomes]
rs481069	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs492255	0.83[AFR][1000 genomes]
rs525172	0.82[AFR][1000 genomes]
rs527034	0.82[AFR][1000 genomes]
rs529396	0.84[AFR][1000 genomes]
rs530474	0.82[AFR][1000 genomes]
rs532300	0.83[AFR][1000 genomes]
rs533211	0.83[AFR][1000 genomes]
rs540897	0.83[AFR][1000 genomes]
rs541041	1.00[ASN][1000 genomes]
rs544450	0.83[AFR][1000 genomes]
rs547179	0.80[AFR][1000 genomes]
rs547235	0.82[AFR][1000 genomes]
rs548145	1.00[ASN][1000 genomes]
rs548506	0.81[AFR][1000 genomes]
rs557197	0.83[AFR][1000 genomes]
rs559318	0.81[AFR][1000 genomes]
rs560522	0.82[AFR][1000 genomes]
rs562338	1.00[ASN][1000 genomes]
rs563290	1.00[ASN][1000 genomes]
rs572246	0.82[AFR][1000 genomes]
rs573314	0.82[AFR][1000 genomes]
rs580889	1.00[ASN][1000 genomes]
rs581411	1.00[ASN][1000 genomes]
rs614303	1.00[ASN][1000 genomes]
rs668948	1.00[ASN][1000 genomes]
rs67332771	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21315800-21320000	Enhancers	HepG2	liver
3	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:21316000-21319200	Weak transcription	Adipose Nuclei	Adipose
5	chr2:21316000-21319400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:21317600-21320000	Active TSS	Liver	Liver
7	chr2:21318200-21319600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:21318200-21322800	Enhancers	Fetal Intestine Large	intestine
9	chr2:21318200-21323600	Enhancers	Fetal Intestine Small	intestine
10	chr2:21318400-21322400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:21318600-21319200	Enhancers	Psoas Muscle	Psoas
12	chr2:21318800-21319400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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