Variant report

Variant	rs13011615
Chromosome Location	chr2:21274167-21274168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12714264	0.81[EUR][1000 genomes]
rs13423380	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1713222	0.82[AMR][1000 genomes]
rs34722314	0.88[EUR][1000 genomes]
rs34872576	0.85[EUR][1000 genomes]
rs34916112	0.85[EUR][1000 genomes]
rs35913552	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018965	0.80[EUR][1000 genomes]
rs481069	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672889	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67332771	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21270600-21276000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:21270600-21276400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:21271000-21274800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:21271000-21276200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:21271000-21276400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:21271000-21276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:21271200-21275800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:21271200-21279000	Weak transcription	Fetal Intestine Small	intestine
9	chr2:21272200-21274400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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