Variant report

Variant	rs481069
Chromosome Location	chr2:21281856-21281857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12714264	0.82[EUR][1000 genomes]
rs13011615	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423380	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1713222	0.88[AMR][1000 genomes]
rs1800481	0.86[AMR][1000 genomes]
rs34722314	0.89[EUR][1000 genomes]
rs34872576	0.87[EUR][1000 genomes]
rs34882389	0.81[EUR][1000 genomes]
rs34916112	0.87[EUR][1000 genomes]
rs35913552	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018965	0.82[EUR][1000 genomes]
rs531819	0.83[AMR][1000 genomes]
rs672889	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67332771	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21279200-21282400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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