Variant report

Variant	rs34882389
Chromosome Location	chr2:21381214-21381215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10221768	0.88[EUR][1000 genomes]
rs13411597	1.00[ASN][1000 genomes]
rs13423380	0.92[EUR][1000 genomes]
rs1367119	1.00[ASN][1000 genomes]
rs1367120	1.00[ASN][1000 genomes]
rs1652416	1.00[ASN][1000 genomes]
rs1652417	1.00[ASN][1000 genomes]
rs1652420	1.00[ASN][1000 genomes]
rs1652421	1.00[ASN][1000 genomes]
rs1652422	1.00[ASN][1000 genomes]
rs1712247	1.00[ASN][1000 genomes]
rs1712248	1.00[ASN][1000 genomes]
rs1712251	1.00[ASN][1000 genomes]
rs312936	1.00[ASN][1000 genomes]
rs312979	1.00[ASN][1000 genomes]
rs312981	1.00[ASN][1000 genomes]
rs312982	1.00[ASN][1000 genomes]
rs312983	1.00[ASN][1000 genomes]
rs312984	1.00[ASN][1000 genomes]
rs312985	1.00[ASN][1000 genomes]
rs34722314	0.84[AMR][1000 genomes]
rs34872576	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34916112	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35913552	0.80[EUR][1000 genomes]
rs36018965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560142	1.00[ASN][1000 genomes]
rs4591370	1.00[ASN][1000 genomes]
rs473269	1.00[ASN][1000 genomes]
rs477146	1.00[ASN][1000 genomes]
rs478442	1.00[ASN][1000 genomes]
rs481069	0.81[EUR][1000 genomes]
rs483621	1.00[ASN][1000 genomes]
rs486246	1.00[ASN][1000 genomes]
rs487858	1.00[ASN][1000 genomes]
rs490757	1.00[ASN][1000 genomes]
rs492255	1.00[ASN][1000 genomes]
rs494315	1.00[ASN][1000 genomes]
rs494465	1.00[ASN][1000 genomes]
rs502323	1.00[ASN][1000 genomes]
rs504091	1.00[ASN][1000 genomes]
rs504616	1.00[ASN][1000 genomes]
rs506585	1.00[ASN][1000 genomes]
rs507616	1.00[ASN][1000 genomes]
rs522250	1.00[ASN][1000 genomes]
rs522822	1.00[ASN][1000 genomes]
rs522963	1.00[ASN][1000 genomes]
rs525172	1.00[ASN][1000 genomes]
rs527034	1.00[ASN][1000 genomes]
rs527259	1.00[ASN][1000 genomes]
rs529396	1.00[ASN][1000 genomes]
rs529697	1.00[ASN][1000 genomes]
rs530474	1.00[ASN][1000 genomes]
rs531380	1.00[ASN][1000 genomes]
rs532225	1.00[ASN][1000 genomes]
rs532300	1.00[ASN][1000 genomes]
rs533211	1.00[ASN][1000 genomes]
rs540897	1.00[ASN][1000 genomes]
rs541569	1.00[ASN][1000 genomes]
rs557197	1.00[ASN][1000 genomes]
rs558130	1.00[ASN][1000 genomes]
rs558342	1.00[ASN][1000 genomes]
rs559318	1.00[ASN][1000 genomes]
rs559967	1.00[ASN][1000 genomes]
rs560408	1.00[ASN][1000 genomes]
rs560522	1.00[ASN][1000 genomes]
rs561850	1.00[ASN][1000 genomes]
rs563719	1.00[ASN][1000 genomes]
rs563752	1.00[ASN][1000 genomes]
rs569014	1.00[ASN][1000 genomes]
rs570033	1.00[ASN][1000 genomes]
rs574461	1.00[ASN][1000 genomes]
rs66774912	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs672889	0.91[EUR][1000 genomes]
rs67332771	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9798358	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21380400-21382600	Weak transcription	HepG2	liver

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