Variant report
| Variant | rs66774912 |
|---|---|
| Chromosome Location | chr2:21423532-21423533 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr2:21423310-21423644 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271629 | TF binding region |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10169543 | 1.00[ASN][1000 genomes] |
| rs10193924 | 1.00[ASN][1000 genomes] |
| rs10204476 | 1.00[ASN][1000 genomes] |
| rs10205003 | 1.00[ASN][1000 genomes] |
| rs10221768 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10221876 | 1.00[ASN][1000 genomes] |
| rs11897480 | 1.00[ASN][1000 genomes] |
| rs12712923 | 1.00[ASN][1000 genomes] |
| rs12712940 | 1.00[ASN][1000 genomes] |
| rs13397898 | 1.00[ASN][1000 genomes] |
| rs13419611 | 1.00[ASN][1000 genomes] |
| rs13423380 | 0.80[EUR][1000 genomes] |
| rs17041988 | 1.00[ASN][1000 genomes] |
| rs17042000 | 1.00[ASN][1000 genomes] |
| rs1878512 | 1.00[ASN][1000 genomes] |
| rs34002646 | 1.00[ASN][1000 genomes] |
| rs34125138 | 1.00[ASN][1000 genomes] |
| rs34872576 | 0.82[EUR][1000 genomes] |
| rs34882389 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34916112 | 0.82[EUR][1000 genomes] |
| rs36018965 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs36047821 | 1.00[ASN][1000 genomes] |
| rs365946 | 1.00[ASN][1000 genomes] |
| rs367162 | 1.00[ASN][1000 genomes] |
| rs380240 | 1.00[ASN][1000 genomes] |
| rs403880 | 1.00[ASN][1000 genomes] |
| rs428696 | 1.00[ASN][1000 genomes] |
| rs431493 | 1.00[ASN][1000 genomes] |
| rs432483 | 1.00[ASN][1000 genomes] |
| rs4505563 | 1.00[ASN][1000 genomes] |
| rs453862 | 1.00[ASN][1000 genomes] |
| rs4542883 | 1.00[ASN][1000 genomes] |
| rs4542884 | 1.00[ASN][1000 genomes] |
| rs4596008 | 1.00[ASN][1000 genomes] |
| rs539845 | 1.00[ASN][1000 genomes] |
| rs67144154 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs67599264 | 1.00[ASN][1000 genomes] |
| rs7578527 | 1.00[ASN][1000 genomes] |
| rs7578637 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873728 | chr2:21250914-21460786 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21416200-21424400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
