Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10169543	1.00[ASN][1000 genomes]
rs10193924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10204476	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221768	1.00[ASN][1000 genomes]
rs10221876	1.00[ASN][1000 genomes]
rs11897480	1.00[ASN][1000 genomes]
rs12712923	1.00[ASN][1000 genomes]
rs12712940	1.00[ASN][1000 genomes]
rs13397898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17041988	1.00[ASN][1000 genomes]
rs17042000	1.00[ASN][1000 genomes]
rs1878512	1.00[ASN][1000 genomes]
rs34002646	1.00[ASN][1000 genomes]
rs34125138	1.00[ASN][1000 genomes]
rs36047821	1.00[ASN][1000 genomes]
rs365946	1.00[ASN][1000 genomes]
rs367162	1.00[ASN][1000 genomes]
rs380240	1.00[ASN][1000 genomes]
rs403880	1.00[ASN][1000 genomes]
rs428696	1.00[ASN][1000 genomes]
rs431493	1.00[ASN][1000 genomes]
rs432483	1.00[ASN][1000 genomes]
rs4505563	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514902	0.92[EUR][1000 genomes]
rs453862	1.00[ASN][1000 genomes]
rs4542883	1.00[ASN][1000 genomes]
rs4542884	1.00[ASN][1000 genomes]
rs4596008	1.00[ASN][1000 genomes]
rs539845	1.00[ASN][1000 genomes]
rs66774912	1.00[ASN][1000 genomes]
rs67599264	1.00[ASN][1000 genomes]
rs7578527	1.00[ASN][1000 genomes]
rs7578637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519215	chr2:21473751-21502727	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523572	chr2:21489083-21493269	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	nsv518468	chr2:21489083-21502727	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21479000-21490400	Weak transcription	Spleen	Spleen
2	chr2:21479400-21494800	Enhancers	Brain Substantia Nigra	brain
3	chr2:21481600-21490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:21483400-21490600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:21483600-21490200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:21485000-21490400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21487000-21489800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:21488000-21489800	Weak transcription	Brain Angular Gyrus	brain
9	chr2:21488000-21489800	Weak transcription	Brain Anterior Caudate	brain
10	chr2:21488000-21489800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:21488800-21489800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:21488800-21489800	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:21488800-21490400	Weak transcription	K562	blood
14	chr2:21488800-21490800	Weak transcription	Aorta	Aorta
15	chr2:21489000-21492600	Enhancers	Ovary	ovary
16	chr2:21489600-21491000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr2:21489600-21495400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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