Variant report

Variant	rs432483
Chromosome Location	chr2:21450349-21450350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21444080..21447303-chr2:21449844..21452884,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10169543	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10193924	1.00[ASN][1000 genomes]
rs10204476	1.00[ASN][1000 genomes]
rs10205003	1.00[ASN][1000 genomes]
rs10221768	1.00[ASN][1000 genomes]
rs10221876	1.00[ASN][1000 genomes]
rs11897480	1.00[ASN][1000 genomes]
rs12712923	1.00[ASN][1000 genomes]
rs12712940	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13397898	1.00[ASN][1000 genomes]
rs13419611	1.00[ASN][1000 genomes]
rs17041988	1.00[ASN][1000 genomes]
rs17042000	1.00[ASN][1000 genomes]
rs1878512	1.00[ASN][1000 genomes]
rs34002646	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34125138	1.00[ASN][1000 genomes]
rs36047821	1.00[ASN][1000 genomes]
rs365946	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs380240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs428696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431493	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441169	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4505563	1.00[ASN][1000 genomes]
rs453862	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542883	1.00[ASN][1000 genomes]
rs4542884	1.00[ASN][1000 genomes]
rs4596008	1.00[ASN][1000 genomes]
rs478442	0.90[CEU][hapmap]
rs539845	1.00[ASN][1000 genomes]
rs541569	0.90[CEU][hapmap]
rs544039	0.90[CEU][hapmap]
rs560408	0.90[CEU][hapmap]
rs66774912	1.00[ASN][1000 genomes]
rs67599264	1.00[ASN][1000 genomes]
rs7578527	1.00[ASN][1000 genomes]
rs7578637	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21446400-21451200	Weak transcription	Aorta	Aorta
2	chr2:21449000-21451000	Weak transcription	Pancreas	Pancrea
3	chr2:21449000-21454800	Weak transcription	Spleen	Spleen

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