Variant report

Variant	rs34002646
Chromosome Location	chr2:21425323-21425324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr2:21425293-21425475	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000271629	TF binding region

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10169543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193924	1.00[ASN][1000 genomes]
rs10204476	1.00[ASN][1000 genomes]
rs10205003	1.00[ASN][1000 genomes]
rs10221768	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10221876	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897480	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712923	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712940	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13397898	1.00[ASN][1000 genomes]
rs13411597	0.85[EUR][1000 genomes]
rs13419611	1.00[ASN][1000 genomes]
rs1367119	0.83[EUR][1000 genomes]
rs1367120	0.83[EUR][1000 genomes]
rs1652416	0.85[EUR][1000 genomes]
rs1652417	0.85[EUR][1000 genomes]
rs1652419	0.84[EUR][1000 genomes]
rs1652420	0.84[EUR][1000 genomes]
rs1652421	0.84[EUR][1000 genomes]
rs1652422	0.84[EUR][1000 genomes]
rs1652423	0.80[EUR][1000 genomes]
rs17041988	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042000	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1712247	0.84[EUR][1000 genomes]
rs1712248	0.81[EUR][1000 genomes]
rs1712250	0.84[EUR][1000 genomes]
rs1712251	0.85[EUR][1000 genomes]
rs1878512	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs312936	0.86[EUR][1000 genomes]
rs312979	0.84[EUR][1000 genomes]
rs312981	0.84[EUR][1000 genomes]
rs312982	0.84[EUR][1000 genomes]
rs312983	0.83[EUR][1000 genomes]
rs312984	0.84[EUR][1000 genomes]
rs312985	0.84[EUR][1000 genomes]
rs34125138	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36047821	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365946	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs367162	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs380240	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs403880	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs428696	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs431493	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs432483	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs441169	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4505563	1.00[ASN][1000 genomes]
rs453862	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4542883	1.00[ASN][1000 genomes]
rs4542884	1.00[ASN][1000 genomes]
rs4560142	0.84[EUR][1000 genomes]
rs4591370	0.84[EUR][1000 genomes]
rs4596008	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473269	0.85[EUR][1000 genomes]
rs477146	0.85[EUR][1000 genomes]
rs478442	0.85[EUR][1000 genomes]
rs483621	0.85[EUR][1000 genomes]
rs486246	0.86[EUR][1000 genomes]
rs487858	0.86[EUR][1000 genomes]
rs490757	0.83[EUR][1000 genomes]
rs492255	0.84[EUR][1000 genomes]
rs494315	0.86[EUR][1000 genomes]
rs494465	0.86[EUR][1000 genomes]
rs502323	0.86[EUR][1000 genomes]
rs504091	0.84[EUR][1000 genomes]
rs504616	0.81[EUR][1000 genomes]
rs506585	0.85[EUR][1000 genomes]
rs507616	0.85[EUR][1000 genomes]
rs522250	0.84[EUR][1000 genomes]
rs522822	0.86[EUR][1000 genomes]
rs522963	0.84[EUR][1000 genomes]
rs525172	0.84[EUR][1000 genomes]
rs527034	0.84[EUR][1000 genomes]
rs527259	0.92[EUR][1000 genomes]
rs529396	0.84[EUR][1000 genomes]
rs529697	0.84[EUR][1000 genomes]
rs530474	0.84[EUR][1000 genomes]
rs531380	0.85[EUR][1000 genomes]
rs532225	0.85[EUR][1000 genomes]
rs532300	0.84[EUR][1000 genomes]
rs533211	0.84[EUR][1000 genomes]
rs533772	0.84[EUR][1000 genomes]
rs539845	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540897	0.83[EUR][1000 genomes]
rs541569	0.85[EUR][1000 genomes]
rs544450	0.84[EUR][1000 genomes]
rs547179	0.83[EUR][1000 genomes]
rs547235	0.84[EUR][1000 genomes]
rs548506	0.84[EUR][1000 genomes]
rs557197	0.84[EUR][1000 genomes]
rs558130	0.83[EUR][1000 genomes]
rs558342	0.85[EUR][1000 genomes]
rs559318	0.84[EUR][1000 genomes]
rs559967	0.84[EUR][1000 genomes]
rs560408	0.85[EUR][1000 genomes]
rs560522	0.84[EUR][1000 genomes]
rs561850	0.85[EUR][1000 genomes]
rs563719	0.85[EUR][1000 genomes]
rs563752	0.85[EUR][1000 genomes]
rs569014	0.91[EUR][1000 genomes]
rs570033	0.85[EUR][1000 genomes]
rs572246	0.80[EUR][1000 genomes]
rs573314	0.84[EUR][1000 genomes]
rs574461	0.86[EUR][1000 genomes]
rs66774912	1.00[ASN][1000 genomes]
rs67599264	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578527	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578637	1.00[ASN][1000 genomes]
rs9798358	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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