Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21283850..21285927-chr2:21290254..21292144,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12714264	0.83[CEU][hapmap]
rs1712248	0.80[AMR][1000 genomes]
rs312944	1.00[ASN][1000 genomes]
rs34872576	1.00[ASN][1000 genomes]
rs34916112	1.00[ASN][1000 genomes]
rs478442	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs478588	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503105	0.81[EUR][1000 genomes]
rs515135	0.98[EUR][1000 genomes]
rs541041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541569	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs544039	0.85[CEU][hapmap]
rs548145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560408	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs562338	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563290	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580889	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581411	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614303	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672889	1.00[ASN][1000 genomes]
rs67332771	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21290000-21293600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:21290200-21291600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:21290200-21291600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:21290200-21292200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:21290800-21291600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:21290800-21291600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:21290800-21291600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:21290800-21291600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr2:21290800-21292200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:21291000-21292600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:21291000-21292800	Enhancers	HepG2	liver
12	chr2:21291200-21292800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:21291200-21292800	Weak transcription	Fetal Intestine Small	intestine
14	chr2:21291400-21291600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:21291400-21292600	Weak transcription	Fetal Intestine Large	intestine
16	chr2:21291400-21292800	Weak transcription	HUVEC	blood vessel

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