Variant report

Variant	rs503113
Chromosome Location	chr11:72920164-72920165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10898906	0.92[ASN][1000 genomes]
rs10898907	0.92[ASN][1000 genomes]
rs1628464	0.88[AFR][1000 genomes]
rs476923	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs558202	0.92[EUR][1000 genomes]
rs565889	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580840	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72910200-72925000	Weak transcription	Left Ventricle	heart
2	chr11:72913000-72928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:72913200-72924600	Weak transcription	Right Ventricle	heart
4	chr11:72916600-72923800	Weak transcription	Psoas Muscle	Psoas
5	chr11:72916800-72928400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:72917400-72923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:72918000-72920200	Weak transcription	Fetal Intestine Large	intestine
8	chr11:72918200-72924200	Weak transcription	HMEC	breast
9	chr11:72918200-72925600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:72918800-72928200	Weak transcription	A549	lung
11	chr11:72919200-72921800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:72919600-72921600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:72919800-72924000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:72919800-72925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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