Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:72525672..72527484-chr11:72916376..72918679,2	MCF-7	breast:
2	chr11:72904843..72907504-chr11:72914729..72918544,3	K562	blood:
3	chr11:72916749..72919689-chr11:72928311..72931134,2	MCF-7	breast:
4	chr11:72916324..72918508-chr11:72932164..72934285,2	MCF-7	breast:
5	chr11:72916805..72918862-chr11:72928684..72930515,2	K562	blood:

Variant related genes	Relation type
ENSG00000175591	Chromatin interaction
ENSG00000168010	Chromatin interaction

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10898906	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];1.00[ASN][1000 genomes]
rs10898907	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs476923	0.99[EUR][1000 genomes]
rs503113	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs508859	0.81[CHD][hapmap]
rs523907	0.81[CHD][hapmap]
rs558202	0.93[EUR][1000 genomes]
rs580840	0.95[EUR][1000 genomes]
rs7113313	0.85[ASN][1000 genomes]
rs947850	0.88[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72909400-72919800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:72910200-72925000	Weak transcription	Left Ventricle	heart
3	chr11:72913000-72928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:72913200-72924600	Weak transcription	Right Ventricle	heart
5	chr11:72914400-72918400	Enhancers	Primary B cells from cord blood	blood
6	chr11:72916600-72923800	Weak transcription	Psoas Muscle	Psoas
7	chr11:72916800-72928400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:72917200-72919200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:72917200-72919600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:72917400-72923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:72917600-72918200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:72917600-72918200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:72917600-72918200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:72917600-72918200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:72917600-72918200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:72917600-72918200	Enhancers	HUVEC	blood vessel
17	chr11:72917600-72918200	Enhancers	NH-A	brain
18	chr11:72917600-72918200	Enhancers	NHEK	skin
19	chr11:72917800-72918200	Flanking Active TSS	A549	lung
20	chr11:72917800-72918200	Enhancers	HMEC	breast
21	chr11:72918000-72918200	Enhancers	Hela-S3	cervix
22	chr11:72918000-72920200	Weak transcription	Fetal Intestine Large	intestine

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