Variant report

Variant	rs10898907
Chromosome Location	chr11:72917323-72917324
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72525672..72527484-chr11:72916376..72918679,2	MCF-7	breast:
2	chr11:72904843..72907504-chr11:72914729..72918544,3	K562	blood:
3	chr11:72915299..72917436-chr11:72918454..72921280,3	K562	blood:
4	chr11:72916749..72919689-chr11:72928311..72931134,2	MCF-7	breast:
5	chr11:72915574..72917566-chr11:72921611..72924292,2	MCF-7	breast:
6	chr11:72916324..72918508-chr11:72932164..72934285,2	MCF-7	breast:
7	chr11:72916036..72917695-chr11:72937306..72940279,2	MCF-7	breast:
8	chr11:72916805..72918862-chr11:72928684..72930515,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168010	Chromatin interaction
ENSG00000175591	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10898906	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs503113	0.92[ASN][1000 genomes]
rs508859	0.85[CHD][hapmap]
rs523907	0.85[CHD][hapmap]
rs565889	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs7113313	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72968141	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs947850	0.88[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898907	P2RY2	cis	multi-tissue	Pritchard

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72900600-72918000	Enhancers	Fetal Intestine Large	intestine
2	chr11:72909400-72919800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:72910200-72917800	Weak transcription	HMEC	breast
4	chr11:72910200-72925000	Weak transcription	Left Ventricle	heart
5	chr11:72911200-72917400	Enhancers	Fetal Intestine Small	intestine
6	chr11:72911800-72917600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:72913000-72928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:72913200-72924600	Weak transcription	Right Ventricle	heart
9	chr11:72913400-72917600	Weak transcription	NHEK	skin
10	chr11:72913600-72917600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:72914400-72918400	Enhancers	Primary B cells from cord blood	blood
12	chr11:72916000-72917400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:72916000-72917800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:72916200-72917400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:72916200-72917800	Enhancers	A549	lung
16	chr11:72916400-72917800	Enhancers	HepG2	liver
17	chr11:72916600-72923800	Weak transcription	Psoas Muscle	Psoas
18	chr11:72916800-72917400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:72916800-72928400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:72917000-72917600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:72917200-72917800	Enhancers	Hela-S3	cervix
22	chr11:72917200-72919200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr11:72917200-72919600	Enhancers	Primary neutrophils fromperipheralblood	blood

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