Variant report

Variant	rs523907
Chromosome Location	chr11:72913638-72913639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72909638..72911879-chr11:72913633..72917276,4	K562	blood:
2	chr11:72913548..72915421-chr11:72998391..73001301,2	MCF-7	breast:
3	chr11:72492055..72493642-chr11:72912251..72914613,2	MCF-7	breast:
4	chr11:72905812..72907707-chr11:72912116..72914708,3	K562	blood:

Variant related genes	Relation type
ENSG00000214530	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10898906	0.85[CHD][hapmap]
rs10898907	0.85[CHD][hapmap]
rs565889	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72896200-72916600	Enhancers	Placenta	Placenta
2	chr11:72900600-72918000	Enhancers	Fetal Intestine Large	intestine
3	chr11:72902400-72914600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:72902600-72915000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:72906200-72915000	Weak transcription	Gastric	stomach
6	chr11:72906800-72916400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:72909400-72919800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:72909600-72913800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:72910200-72917200	Weak transcription	Hela-S3	cervix
10	chr11:72910200-72917800	Weak transcription	HMEC	breast
11	chr11:72910200-72925000	Weak transcription	Left Ventricle	heart
12	chr11:72910800-72915400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:72911200-72913800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:72911200-72913800	Enhancers	Esophagus	oesophagus
15	chr11:72911200-72915400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:72911200-72915600	Weak transcription	A549	lung
17	chr11:72911200-72917400	Enhancers	Fetal Intestine Small	intestine
18	chr11:72911800-72914400	Weak transcription	Primary B cells from cord blood	blood
19	chr11:72911800-72915000	Weak transcription	Psoas Muscle	Psoas
20	chr11:72911800-72916600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:72911800-72917600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:72912400-72913800	Enhancers	Colonic Mucosa	Colon
23	chr11:72912400-72913800	Enhancers	K562	blood
24	chr11:72912600-72914400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:72912600-72914600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:72912600-72914600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:72913000-72915600	Weak transcription	Brain Substantia Nigra	brain
28	chr11:72913000-72915600	Weak transcription	Right Atrium	heart
29	chr11:72913000-72928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:72913200-72914600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:72913200-72915200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:72913200-72916000	Weak transcription	Adipose Nuclei	Adipose
33	chr11:72913200-72916000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:72913200-72924600	Weak transcription	Right Ventricle	heart
35	chr11:72913400-72914400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:72913400-72916400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:72913400-72917600	Weak transcription	NHEK	skin
38	chr11:72913600-72915000	Weak transcription	Spleen	Spleen
39	chr11:72913600-72917600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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