Variant report

Variant	rs503456
Chromosome Location	chr6:145571038-145571039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs502530	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs511218	0.81[EUR][1000 genomes]
rs526957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs538952	1.00[EUR][1000 genomes]
rs545097	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs545585	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs555924	0.97[EUR][1000 genomes]
rs564362	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs566635	0.91[EUR][1000 genomes]
rs579832	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145569200-145574400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:145569400-145574000	Weak transcription	Hela-S3	cervix
3	chr6:145570200-145572200	Enhancers	Liver	Liver
4	chr6:145570400-145572000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:145571000-145572200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links