Variant report

Variant	rs538952
Chromosome Location	chr6:145565095-145565096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs502530	0.88[EUR][1000 genomes]
rs503456	1.00[EUR][1000 genomes]
rs511218	0.81[EUR][1000 genomes]
rs526957	1.00[EUR][1000 genomes]
rs545097	0.97[EUR][1000 genomes]
rs545585	0.91[EUR][1000 genomes]
rs555924	0.97[EUR][1000 genomes]
rs564362	0.97[EUR][1000 genomes]
rs566635	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57826478	0.84[AFR][1000 genomes]
rs579832	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145560400-145565800	Weak transcription	Fetal Brain Male	brain
2	chr6:145561600-145566200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:145562800-145565400	Weak transcription	HepG2	liver
4	chr6:145562800-145566400	Weak transcription	NH-A	brain
5	chr6:145562800-145568000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:145562800-145568000	Weak transcription	Hela-S3	cervix
7	chr6:145562800-145568600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:145563000-145568600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:145563000-145568600	Weak transcription	Osteobl	bone
10	chr6:145563200-145565200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:145563200-145565800	Weak transcription	A549	lung
12	chr6:145563200-145565800	Weak transcription	NHDF-Ad	bronchial
13	chr6:145563200-145566000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:145563200-145568600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:145564800-145567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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