Variant report

Variant	rs503669
Chromosome Location	chr3:100993510-100993511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11929578	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1464361	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2433032	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2449824	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2460721	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553414	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553420	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553422	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553423	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553428	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2682387	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682389	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3846092	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs472751	0.89[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs485037	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs485793	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs503252	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs504482	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs513283	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs524261	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs534119	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs535779	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs551395	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs554030	0.89[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs556820	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs565914	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs566292	0.89[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61379928	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs63482	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6779775	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6791803	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6809436	0.89[CEU][hapmap]
rs72942230	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72942264	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7618600	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7638284	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7648141	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs770968	0.89[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917699	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100955000-100994000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:100958800-101012800	Weak transcription	Left Ventricle	heart
3	chr3:100975400-100997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:100979600-100995000	Weak transcription	Aorta	Aorta
5	chr3:100980800-100998000	Weak transcription	HSMM	muscle
6	chr3:100982400-100998800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:100985800-100995400	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:100986600-100998400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:100987200-100994000	Weak transcription	Adipose Nuclei	Adipose
10	chr3:100987400-100993600	Weak transcription	Psoas Muscle	Psoas
11	chr3:100988400-100998000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:100989400-101018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:100991200-100994000	Weak transcription	Gastric	stomach
14	chr3:100991200-100994000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:100991600-100994200	Weak transcription	Primary T cells from cord blood	blood
16	chr3:100991800-100998200	Weak transcription	HSMMtube	muscle

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