Variant report

Variant	rs7618600
Chromosome Location	chr3:101183876-101183877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1078153	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11924203	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11929578	1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12491044	0.95[EUR][1000 genomes]
rs12696325	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13072446	0.84[EUR][1000 genomes]
rs1426386	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1464361	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1569071	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs2433032	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2449824	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460721	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553414	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553420	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553422	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553423	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553428	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682387	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2682389	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs3846092	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273611	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4234491	0.96[EUR][1000 genomes]
rs4683930	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes]
rs472751	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs485037	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs485793	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs503252	0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs503669	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs504482	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs513283	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs524261	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs534119	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs535779	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs551395	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs554030	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556820	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs565914	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs566292	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61379928	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs63482	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763679	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6768114	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6768182	0.96[EUR][1000 genomes]
rs6779278	0.96[EUR][1000 genomes]
rs6779775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788864	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs6791803	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794860	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6805496	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6809436	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs72942230	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72942264	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72948053	0.95[EUR][1000 genomes]
rs7613194	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7621062	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7638284	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7644519	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7648141	0.91[EUR][1000 genomes]
rs770968	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9820611	0.83[EUR][1000 genomes]
rs9917699	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
2	chr3:101146000-101185600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:101160200-101185600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:101160200-101210800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:101160600-101184000	Weak transcription	Spleen	Spleen
6	chr3:101160600-101185600	Weak transcription	Gastric	stomach
7	chr3:101161400-101185600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:101161400-101196800	Weak transcription	Thymus	Thymus
9	chr3:101161400-101207600	Weak transcription	Aorta	Aorta
10	chr3:101164400-101185400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:101165400-101185400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:101167200-101184000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:101170600-101184000	Weak transcription	Esophagus	oesophagus
14	chr3:101170800-101185600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:101171000-101185600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:101171200-101185200	Weak transcription	Fetal Heart	heart
17	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
18	chr3:101171400-101193400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:101171400-101207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:101174000-101202000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:101174600-101184000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:101174600-101184200	Weak transcription	HepG2	liver
23	chr3:101174600-101185000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:101174600-101211000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:101174800-101184200	Weak transcription	HUVEC	blood vessel
26	chr3:101175400-101184200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:101176000-101211200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:101176600-101185400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:101176600-101185600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:101176600-101211600	Weak transcription	HSMM	muscle
31	chr3:101176800-101184000	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:101176800-101184000	Weak transcription	Ovary	ovary
33	chr3:101176800-101185600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:101176800-101193400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr3:101176800-101203200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:101176800-101211200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr3:101176800-101211400	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:101177000-101185400	Weak transcription	Left Ventricle	heart
39	chr3:101177000-101185600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:101177600-101185600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr3:101177600-101191600	Weak transcription	Primary B cells from cord blood	blood
42	chr3:101177600-101194200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:101177600-101210800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:101177800-101184000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:101177800-101184800	Weak transcription	Liver	Liver
46	chr3:101177800-101185000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:101177800-101185600	Weak transcription	Fetal Thymus	thymus
48	chr3:101177800-101193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:101177800-101194200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:101177800-101202000	Weak transcription	Dnd41	blood

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