Variant report

Variant	rs12696325
Chromosome Location	chr3:101333441-101333442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:101329588-101344518	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101331762..101333871-chr3:101336729..101339196,2	K562	blood:
2	chr3:101330944..101333451-chr3:101352917..101354894,2	K562	blood:

Variant related genes	Relation type
RNU6-1256P	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1078153	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924203	0.89[EUR][1000 genomes]
rs11929578	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12491044	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13072446	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1426386	0.96[EUR][1000 genomes]
rs1569071	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2553428	0.88[EUR][1000 genomes]
rs3846092	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs41273611	0.89[EUR][1000 genomes]
rs4234491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683930	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61379928	0.89[EUR][1000 genomes]
rs6763679	0.89[EUR][1000 genomes]
rs6764700	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6768114	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6768182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779775	0.96[EUR][1000 genomes]
rs6788864	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791803	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6794860	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs6805496	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs6806256	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6809436	1.00[CEU][hapmap]
rs72942230	0.89[EUR][1000 genomes]
rs72942264	0.89[EUR][1000 genomes]
rs72948053	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7613194	0.87[EUR][1000 genomes]
rs7618600	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7621062	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638284	0.89[EUR][1000 genomes]
rs7644519	0.89[EUR][1000 genomes]
rs7645698	0.86[EUR][1000 genomes]
rs7648141	0.88[EUR][1000 genomes]
rs9820611	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9917699	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101331400-101342600	Weak transcription	K562	blood
2	chr3:101331800-101341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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