Variant report

Variant	rs9820611
Chromosome Location	chr3:101322611-101322612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101321515..101323035-chr3:101324963..101327603,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1078153	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11929578	0.83[EUR][1000 genomes]
rs12491044	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12696325	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1426386	0.83[EUR][1000 genomes]
rs1569071	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3846092	0.83[EUR][1000 genomes]
rs4234491	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4683930	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6768114	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6768182	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6779278	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6779775	0.83[EUR][1000 genomes]
rs6788864	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6791803	0.83[EUR][1000 genomes]
rs72948053	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7618600	0.83[EUR][1000 genomes]
rs7621062	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv963347	chr3:101318121-101342898	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101296000-101324600	Weak transcription	Aorta	Aorta
2	chr3:101305800-101324400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:101309600-101324000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:101310400-101324800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:101311000-101329800	Weak transcription	Thymus	Thymus
6	chr3:101311400-101324400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:101311400-101324600	Weak transcription	Esophagus	oesophagus
8	chr3:101311400-101329600	Weak transcription	K562	blood
9	chr3:101313400-101324600	Weak transcription	HSMM	muscle
10	chr3:101314400-101324000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:101314800-101328200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:101315000-101323200	Weak transcription	Lung	lung
13	chr3:101316400-101323200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:101316400-101331800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:101316600-101323200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:101318600-101324600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:101318600-101326400	Weak transcription	A549	lung
18	chr3:101318600-101331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:101322000-101323200	Weak transcription	HMEC	breast
20	chr3:101322600-101324600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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