Variant report

Variant	rs7621062
Chromosome Location	chr3:101297747-101297748
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101296777..101299755-chr3:101301756..101303953,2	MCF-7	breast:
2	chr3:101230042..101231916-chr3:101297585..101299542,2	K562	blood:
3	chr3:101296714..101298321-chr3:101395804..101398572,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066422	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1078153	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11924203	0.89[EUR][1000 genomes]
rs11929578	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12491044	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12696325	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13072446	0.87[EUR][1000 genomes]
rs1426386	0.96[EUR][1000 genomes]
rs1464361	0.89[EUR][1000 genomes]
rs1569071	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460721	0.89[EUR][1000 genomes]
rs2553414	0.89[EUR][1000 genomes]
rs2553420	0.89[EUR][1000 genomes]
rs2553423	0.89[EUR][1000 genomes]
rs2553428	0.88[EUR][1000 genomes]
rs2682387	0.89[EUR][1000 genomes]
rs2682389	0.86[EUR][1000 genomes]
rs3846092	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs41273611	0.89[EUR][1000 genomes]
rs4234491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4683930	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61379928	0.89[EUR][1000 genomes]
rs6763679	0.89[EUR][1000 genomes]
rs6764700	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6768114	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6768182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779775	0.96[EUR][1000 genomes]
rs6788864	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791803	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6794860	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs6805496	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs6806256	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6809436	1.00[CEU][hapmap]
rs72942230	0.89[EUR][1000 genomes]
rs72942264	0.89[EUR][1000 genomes]
rs72948053	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7613194	0.87[EUR][1000 genomes]
rs7618600	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7638284	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7644519	0.89[EUR][1000 genomes]
rs7645698	0.86[EUR][1000 genomes]
rs7648141	0.88[EUR][1000 genomes]
rs9820611	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9917699	0.89[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101294000-101298400	Weak transcription	Pancreas	Pancrea
2	chr3:101294000-101298400	Weak transcription	Small Intestine	intestine
3	chr3:101294000-101301800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:101294000-101305200	Weak transcription	Esophagus	oesophagus
5	chr3:101294000-101312200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:101294200-101309000	Weak transcription	Colonic Mucosa	Colon
7	chr3:101294200-101310000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:101294200-101319400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:101294400-101298400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:101294400-101309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:101294600-101298600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:101294600-101298600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:101294800-101298400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:101294800-101298400	Weak transcription	Right Ventricle	heart
15	chr3:101294800-101298600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:101294800-101301200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:101294800-101305200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:101295000-101298400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:101295000-101298400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:101295000-101298400	Weak transcription	Liver	Liver
21	chr3:101295000-101298400	Weak transcription	Osteobl	bone
22	chr3:101295000-101298600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:101295000-101298600	Weak transcription	Fetal Kidney	kidney
24	chr3:101295000-101298600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:101295000-101298600	Genic enhancers	Dnd41	blood
26	chr3:101295000-101299600	Weak transcription	Brain Anterior Caudate	brain
27	chr3:101295000-101300000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:101295000-101304000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:101295000-101304600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:101295000-101304600	Weak transcription	NHEK	skin
31	chr3:101295000-101305000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:101295000-101305000	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:101295000-101309400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:101295000-101310200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:101295200-101298400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:101295200-101306800	Weak transcription	Psoas Muscle	Psoas
37	chr3:101295600-101299000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:101295600-101299400	Strong transcription	Fetal Thymus	thymus
39	chr3:101295600-101300000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:101295600-101300200	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:101295600-101300200	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr3:101295600-101300400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:101295800-101305200	Weak transcription	Gastric	stomach
44	chr3:101295800-101315000	Weak transcription	Right Atrium	heart
45	chr3:101296000-101298000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr3:101296000-101298000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr3:101296000-101298200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:101296000-101298200	Enhancers	Fetal Heart	heart
49	chr3:101296000-101300000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:101296000-101300200	Strong transcription	NH-A	brain

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