Variant report

Variant	rs7645698
Chromosome Location	chr3:101414318-101414319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101404733..101406490-chr3:101413222..101415957,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114391	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1078153	0.86[EUR][1000 genomes]
rs11924203	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11929578	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12491044	0.84[EUR][1000 genomes]
rs12696325	0.86[EUR][1000 genomes]
rs1426386	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1569071	0.86[EUR][1000 genomes]
rs3846092	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41273611	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4234491	0.86[EUR][1000 genomes]
rs4683853	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4683930	0.84[EUR][1000 genomes]
rs6763679	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6764700	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6768114	0.84[EUR][1000 genomes]
rs6768182	0.86[EUR][1000 genomes]
rs6779278	0.86[EUR][1000 genomes]
rs6779775	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6788864	0.86[EUR][1000 genomes]
rs6791803	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6794860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6805496	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6806256	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72948053	0.84[EUR][1000 genomes]
rs7613194	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7621062	0.86[EUR][1000 genomes]
rs7644519	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv997407	chr3:101384031-101611391	Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv536675	chr3:101384031-101611391	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101406400-101414400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:101406400-101422200	Weak transcription	Ovary	ovary
3	chr3:101406600-101414600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:101406600-101426400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:101406800-101414400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:101406800-101414400	Weak transcription	Fetal Brain Female	brain
7	chr3:101406800-101414600	Weak transcription	Brain Angular Gyrus	brain
8	chr3:101406800-101419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:101407000-101422600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:101410200-101414600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:101410200-101414600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:101410200-101420600	Weak transcription	Lung	lung
13	chr3:101410800-101414600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:101410800-101415000	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr3:101412400-101414400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:101412800-101414400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:101413000-101414800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:101413600-101414600	Enhancers	Fetal Muscle Leg	muscle
19	chr3:101413600-101414800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:101414200-101415200	Enhancers	Fetal Kidney	kidney

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