Variant report

Variant	rs6763679
Chromosome Location	chr3:101352558-101352559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1078153	0.89[EUR][1000 genomes]
rs11924203	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929578	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12491044	0.88[EUR][1000 genomes]
rs12696325	0.89[EUR][1000 genomes]
rs1426386	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1569071	0.89[EUR][1000 genomes]
rs3846092	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41273611	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4234491	0.89[EUR][1000 genomes]
rs4683853	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4683930	0.88[EUR][1000 genomes]
rs6764700	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6768114	0.88[EUR][1000 genomes]
rs6768182	0.89[EUR][1000 genomes]
rs6774950	0.82[EUR][1000 genomes]
rs6779278	0.89[EUR][1000 genomes]
rs6779775	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6788864	0.89[EUR][1000 genomes]
rs6791803	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6794860	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6805496	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806256	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72942230	0.82[AMR][1000 genomes]
rs72948053	0.88[EUR][1000 genomes]
rs7613194	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7618600	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7621062	0.89[EUR][1000 genomes]
rs7644519	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645698	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv992869	chr3:101348433-101360316	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv511216	chr3:101349644-101366921	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101350400-101352600	Active TSS	K562	blood
2	chr3:101350600-101366800	Weak transcription	Fetal Brain Female	brain
3	chr3:101351200-101353400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:101352200-101352600	Bivalent Enhancer	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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