Variant report

Variant	rs72948053
Chromosome Location	chr3:101278267-101278268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:101273701..101278285-chr3:101278645..101282162,6	K562	blood:
2	chr3:101277954..101280498-chr3:101281065..101283887,2	MCF-7	breast:
3	chr3:101235226..101237848-chr3:101277796..101281104,3	MCF-7	breast:
4	chr3:101251684..101253784-chr3:101277583..101280668,3	K562	blood:

Variant related genes	Relation type
ENSG00000174173	Chromatin interaction
ENSG00000175841	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1078153	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11924203	0.88[EUR][1000 genomes]
rs11929578	0.95[EUR][1000 genomes]
rs12491044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12696325	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13072446	0.86[EUR][1000 genomes]
rs1426386	0.95[EUR][1000 genomes]
rs1464361	0.88[EUR][1000 genomes]
rs1569071	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2433032	0.84[EUR][1000 genomes]
rs2449824	0.88[EUR][1000 genomes]
rs2460721	0.88[EUR][1000 genomes]
rs2553414	0.88[EUR][1000 genomes]
rs2553420	0.88[EUR][1000 genomes]
rs2553422	0.88[EUR][1000 genomes]
rs2553423	0.88[EUR][1000 genomes]
rs2553428	0.86[EUR][1000 genomes]
rs2682387	0.88[EUR][1000 genomes]
rs2682389	0.84[EUR][1000 genomes]
rs3846092	0.95[EUR][1000 genomes]
rs41273611	0.88[EUR][1000 genomes]
rs4234491	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4683930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs485037	0.88[EUR][1000 genomes]
rs485793	0.88[EUR][1000 genomes]
rs61379928	0.88[EUR][1000 genomes]
rs63482	0.86[EUR][1000 genomes]
rs6763679	0.88[EUR][1000 genomes]
rs6764700	0.82[EUR][1000 genomes]
rs6768114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6768182	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6779278	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6779775	0.95[EUR][1000 genomes]
rs6788864	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6791803	0.95[EUR][1000 genomes]
rs6794860	0.88[EUR][1000 genomes]
rs6805496	0.88[EUR][1000 genomes]
rs6806256	0.82[EUR][1000 genomes]
rs72942230	0.88[EUR][1000 genomes]
rs72942264	0.88[EUR][1000 genomes]
rs7613194	0.86[EUR][1000 genomes]
rs7618600	0.95[EUR][1000 genomes]
rs7621062	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7638284	0.88[EUR][1000 genomes]
rs7644519	0.88[EUR][1000 genomes]
rs7645698	0.84[EUR][1000 genomes]
rs7648141	0.86[EUR][1000 genomes]
rs9820611	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9917699	0.88[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101274600-101280400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101276000-101280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:101276600-101280400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:101276800-101278600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:101277000-101279600	Weak transcription	HepG2	liver
6	chr3:101277600-101279800	Weak transcription	K562	blood

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