Variant report

Variant	rs1426386
Chromosome Location	chr3:101267930-101267931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101261380..101263536-chr3:101266715..101268479,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1078153	0.96[EUR][1000 genomes]
rs11924203	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11929578	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12491044	0.95[EUR][1000 genomes]
rs12696325	0.96[EUR][1000 genomes]
rs13072446	0.84[EUR][1000 genomes]
rs1464361	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1569071	0.96[EUR][1000 genomes]
rs2433032	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2449824	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2460721	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553414	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553420	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553422	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553423	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553428	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2682387	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2682389	0.86[EUR][1000 genomes]
rs3846092	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41273611	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4234491	0.96[EUR][1000 genomes]
rs4683930	0.95[EUR][1000 genomes]
rs485037	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs485793	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs513283	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61379928	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs63482	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6763679	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6764700	0.84[EUR][1000 genomes]
rs6768114	0.95[EUR][1000 genomes]
rs6768182	0.96[EUR][1000 genomes]
rs6779278	0.96[EUR][1000 genomes]
rs6779775	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6788864	0.96[EUR][1000 genomes]
rs6791803	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6794860	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6805496	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6806256	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72942230	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72942264	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72948053	0.95[EUR][1000 genomes]
rs7613194	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7618600	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7621062	0.96[EUR][1000 genomes]
rs7638284	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7644519	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7645698	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7648141	0.88[EUR][1000 genomes]
rs9820611	0.83[EUR][1000 genomes]
rs9917699	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101263600-101268000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:101267200-101268400	Enhancers	Fetal Intestine Small	intestine
3	chr3:101267400-101268400	Enhancers	K562	blood
4	chr3:101267600-101268400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:101267600-101268400	Enhancers	Primary T cells from cord blood	blood
6	chr3:101267800-101268000	Flanking Active TSS	HepG2	liver
7	chr3:101267800-101268400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:101267800-101268600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:101267800-101268600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:101267800-101268600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:101267800-101268600	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links