Variant report

Variant	rs11929578
Chromosome Location	chr3:101210970-101210971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:101210866..101213029-chr3:101217079..101219050,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1078153	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11924203	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12491044	0.95[EUR][1000 genomes]
rs12696325	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13072446	0.84[EUR][1000 genomes]
rs1426386	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1464361	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1569071	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs2433032	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2449824	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460721	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553414	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553420	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553422	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553423	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553428	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2682387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2682389	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs3846092	0.89[CEU][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273611	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4234491	0.96[EUR][1000 genomes]
rs4683930	1.00[CEU][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes]
rs472751	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs485037	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs485793	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs503252	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs503669	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs504482	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs513283	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs524261	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs534119	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs535779	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[LWK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs551395	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs554030	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556820	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs565914	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs566292	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61379928	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs63482	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763679	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6768114	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6768182	0.96[EUR][1000 genomes]
rs6779278	0.96[EUR][1000 genomes]
rs6779775	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788864	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs6791803	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794860	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6805496	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6809436	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs72942230	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72942264	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72948053	0.95[EUR][1000 genomes]
rs7613194	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7618600	1.00[CEU][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621062	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7638284	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7644519	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7645698	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7648141	0.91[EUR][1000 genomes]
rs770968	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9820611	0.83[EUR][1000 genomes]
rs9917699	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803745	chr3:101196030-101230330	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101171200-101230400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:101174600-101211000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:101176000-101211200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:101176600-101211600	Weak transcription	HSMM	muscle
5	chr3:101176800-101211200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:101176800-101211400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:101186000-101211000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:101186000-101211000	Weak transcription	Pancreas	Pancrea
9	chr3:101186000-101211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:101186200-101211200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:101186400-101223600	Weak transcription	Gastric	stomach
12	chr3:101187000-101211200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:101193200-101230400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:101193600-101211400	Weak transcription	Fetal Brain Male	brain
15	chr3:101195000-101213200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:101196800-101211400	Weak transcription	Placenta	Placenta
17	chr3:101198400-101220600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:101198600-101231000	Weak transcription	GM12878-XiMat	blood
19	chr3:101199800-101211000	Weak transcription	Liver	Liver
20	chr3:101200400-101211000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:101200400-101216200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:101201800-101211000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:101201800-101220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:101202200-101211400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:101202200-101211400	Weak transcription	Fetal Kidney	kidney
26	chr3:101202200-101230800	Weak transcription	Psoas Muscle	Psoas
27	chr3:101202400-101211400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:101203600-101211000	Weak transcription	Ovary	ovary
29	chr3:101204000-101231200	Weak transcription	Esophagus	oesophagus
30	chr3:101204200-101223800	Weak transcription	NH-A	brain
31	chr3:101204200-101227600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:101204200-101228400	Weak transcription	NHDF-Ad	bronchial
33	chr3:101204400-101225600	Weak transcription	K562	blood
34	chr3:101204400-101230800	Weak transcription	Right Ventricle	heart
35	chr3:101204600-101211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:101204600-101217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:101204600-101219200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:101204600-101230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:101205200-101211000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:101205200-101213600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr3:101205600-101211600	Weak transcription	Small Intestine	intestine
42	chr3:101205600-101220600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr3:101206200-101212600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:101206600-101212200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:101206600-101212200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:101206600-101212400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr3:101206600-101219600	Weak transcription	NHLF	lung
48	chr3:101206800-101224800	Weak transcription	Fetal Heart	heart
49	chr3:101207000-101212200	Strong transcription	Primary T cells from cord blood	blood
50	chr3:101207000-101212200	Strong transcription	Monocytes-CD14+_RO01746	blood

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