Variant report

Variant	rs503891
Chromosome Location	chr6:72206572-72206573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1486595	1.00[YRI][hapmap]
rs17450894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17548083	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17548917	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs183213	0.85[AFR][1000 genomes]
rs199643	1.00[YRI][hapmap]
rs199648	0.85[AFR][1000 genomes]
rs2092531	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4454101	1.00[YRI][hapmap]
rs485722	0.85[AFR][1000 genomes]
rs530938	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453551	1.00[YRI][hapmap]
rs6453553	1.00[YRI][hapmap]
rs6924396	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72205400-72206600	Active TSS	Stomach Smooth Muscle	stomach
3	chr6:72205600-72206600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:72205600-72206600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:72205600-72206600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr6:72205600-72206600	Enhancers	NH-A	brain
7	chr6:72205600-72206600	Active TSS	NHLF	lung
8	chr6:72205600-72206800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:72205600-72206800	Flanking Active TSS	HUVEC	blood vessel
10	chr6:72205800-72206600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:72205800-72206600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:72205800-72206600	Active TSS	Primary hematopoietic stem cells	blood
13	chr6:72205800-72206600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:72205800-72206600	Enhancers	Fetal Heart	heart
15	chr6:72205800-72206600	Active TSS	Fetal Lung	lung
16	chr6:72205800-72206600	Active TSS	Osteobl	bone
17	chr6:72206000-72206600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:72206000-72206600	Flanking Active TSS	Colon Smooth Muscle	Colon
19	chr6:72206000-72206600	Enhancers	GM12878-XiMat	blood
20	chr6:72206000-72206800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:72206200-72206600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:72206200-72206600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:72206200-72206600	Enhancers	Fetal Stomach	stomach
24	chr6:72206200-72206600	Enhancers	Small Intestine	intestine
25	chr6:72206200-72206600	Enhancers	HSMMtube	muscle
26	chr6:72206200-72206800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:72206200-72206800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:72206200-72206800	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:72206200-72210000	Weak transcription	Fetal Kidney	kidney
30	chr6:72206200-72218600	Weak transcription	Aorta	Aorta
31	chr6:72206400-72206600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:72206400-72206600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:72206400-72206600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:72206400-72206600	Enhancers	Adipose Nuclei	Adipose
35	chr6:72206400-72206600	Enhancers	Ovary	ovary
36	chr6:72206400-72206600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:72206400-72206800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:72206400-72206800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:72206400-72206800	Enhancers	Primary B cells from cord blood	blood
40	chr6:72206400-72206800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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